This page contains the R codes for the manuscript, “Investigating microbial co-occurrence patterns based on meta-genomic compositional data” by Ban, An, and Jiang (2015).
(1) Three different models can be used to simulate metagenomic data: REBACCA_simulation_model.R
(2) Compute the microbial co-occurrence patterns:
This file REBACCA_example.R shows an example on how to use the above functions.