Accurate Taxonomic Assignment for Metagenomic Sequencing Data


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Documentation for package ‘TAMER’ version 1.0

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TAMER-package Accurate Taxonamic Assignment of Metagenomic Sequencing Data
eukaryotes Genome size information for eukaryotes
ExampleData Example data
metaPlot Barplots for the summary of results
nodes Taxonomy tree nodes
Preprocess Preprocessing the output data from BLAST
prokaryotes Genome size information for prokaryotes
Relative Relative function for computing the relative genome abundance
SpeciesSummary Species Summary function for the results at different taxonomic levels
TAMER Accurate Taxonamic Assignment of Metagenomic Sequencing Data
TAMER Estimate proportions for all candidate taxa and estimate the sequencing error
viruses Genome size information for viruses